Release Notes

This is the initial release of ccpem-pipeliner, a Python library and command-line tool for designing, running, and automating cryoEM image-processing workflows. It enables structural biologists and facility engineers to chain discrete processing jobs into reproducible, headless pipelines.

New features

Pipeline design and execution framework
Core library for defining, composing, and executing cryoEM image-processing pipelines by chaining discrete processing jobs in a reproducible order.
Command-line interface
A CLI tool for running pipelines headlessly, enabling automation and integration into facility or HPC environments without a graphical interface.
Job abstraction layer
Structured API for defining individual processing jobs with well-typed inputs and outputs, allowing jobs to be connected and reused across different pipeline configurations.
Reproducible workflow management
Pipelines are designed to be serializable and reproducible, supporting consistent re-execution of cryoEM processing workflows across different environments or runs.